图书简介
This new volume provides an up-to-date understanding of the numerous classes of plant transposable elements, the mobile units of DNA that comprise large portions of plant genomes, which are an important contributor for gene and genome evolution. Transposable elements (TEs) are major components of large plant genomes and main drivers of genome evolution, known to produce a wide variety of changes in plant gene expression and function.Providing a systematic interpretation of protocols designed to characterize TEs and their biotechnological roles, the volume explores TEs in plant development, their architecture, their epigenetic regulation, their use in DNA repair, their evolution and speciation, while also highlighting their importance in the approaching epoch of climate change. The volume begins with introduction of transposable elements, covering their classification and transposition. It delves into protocols designed to characterize TEs and their biotechnological applications. The book includes computational approaches for prediction and analysis, retro-transposon capture sequencing, and more. The section on transposon biology focuses on its role in plant development and as natural genetic engineers of genome mutation, evolution, and speciation. The book looks further into transposon applications in genome editing, exploring tagging and mutagenesis, genome engineering, and more.
PART I: INTRODUCTION OF TRANSPOSABLE ELEMENTS (TEs)
1. Introduction, Classification, and Transposition of Transposable Elements (TEs)
Jyothi Chaitanya Pagadala, Deepu Pandita, and Anu Pandita
2. DNA Transposons
Javid Ahmad Malik, Gita Mishra, Younis Ahmad Hajam, Sameer Quazi, and Rafiq Lone
PART II: PROTOCOLS DESIGNED TO CHARACTERIZE TEs AND BIOTECHNOLOGICAL APPLICATIONS
3. Computational Approaches for Prediction and Analysis of Transposable Elements in Plants
Mahantesha B. N. Naika, Akash Das, H. T. Paramesha, Pankaj Barah, and H. V. Chaitra
4. Annotation of Transposable Elements in the Evolution of Plant Genome Biology
Ashok Singamsetti, Kartik Madankar, and P. Lakshmi Padmavathi
5. Retro Transposon Capture Sequencing (RC-Seq)
Praveen Kumar, Mainu Hazarika, and Gagan Kumar
PART III: TRANSPOSON BIOLOGY
6. Transposable Elements and Plant Development
Braulio Edgar Herrera-Cabrera, Luis German Lopez-Valdez, Rafael Salgado-Garciglia, Jorge Montiel-Montoya, Gonzalo Guillermo Lucho-Constantino, Fabiola Zaragoza-Martinez, Jose Lorenzo-Laureano, and Hebert Jair Barrales-Cureno
7. Transposons as Natural Genetic Engineers of Genome Mutation, Evolution, and Speciation
Himanshu Pandey, Divya Chauhan, Nguyen Tran Hai Bang, Rajesh Kumar Singhal, and Udit Nandan Mishra
8. Transposable Elements and Epigenetic Regulation
Muhammad Shan, Akash Fatima, Zarmeena Amjad, and Zulqurnain Khan
9. Transposable Elements and Polyploidy in Plants
Parul Tyagi, Ayushi Singh, Pooja Saraswat, Ambika Chaturvedi, and Rajiv Ranajan
10. Transposable Elements and Plant Architecture
Shilpy Singh, Sr Assumi, and Pooja Bhadrecha
11. Re
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